Protein ZmOrphan88
ZmOrphan88 is a protein in the Orphans family.
Information
Orphans Name: ZmOrphan88
Species: Maize
Orphans Family: Orphans
Gene Name(Synonym):
Uniprot ID: B4FM44
Subgenome: 1

Protein ZmOrphan88

ZmOrphan88 is a protein in the Orphans family.

Overview of domains present in v5 transcripts
PF00072
Zm00001eb082130_T001
Zm00001eb082130_T002

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d003598DAPseq no logo sequence fimo position
Zm00001d003598DAPseq no logo sequence fimo position
Zm00001d003598ChIPseq no logo sequence fimo position
Zm00001d003598PChIPseq no logo sequence fimo position

Interactions where ZmOrphan88 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmOrphan88 is the target  
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There are 89 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb082130_T001 from maize genome v5

Amino Acid Sequence
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MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMVRTHHVALPFPRTVRLKLNVSLTVTVTGCFSASARCCTRREWRSRST
CRSCSSSSCWRTPRCAWASSCTDGRRVAAARSPRGAPDQEGASSAKGQQRCKSPPGHRRQETADAPSIISEAPIALVF

MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMVRTHHVALPFPRTVRLKLNVSLTVTVTGCFSASARCCTRREWRSRST
CRSCSSSSCWRTPRCAWASSCTDGRRVAAARSPRGAPDQEGASSAKGQQRCKSPPGHRRQETADAPSIISEAPIALVF

MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMVRTHHVALPFPRTVRLKLNVSLTVTVTGCFSASARCCTRREWRSRST
CRSCSSSSCWRTPRCAWASSCTDGRRVAAARSPRGAPDQEGASSAKGQQRCKSPPGHRRQETADAPSIISEAPIALVF

MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMVRTHHVALPFPRTVRLKLNVSLTVTVTGCFSASARCCTRREWRSRST
CRSCSSSSCWRTPRCAWASSCTDGRRVAAARSPRGAPDQEGASSAKGQQRCKSPPGHRRQETADAPSIISEAPIALVF

MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMVRTHHVALPFPRTVRLKLNVSLTVTVTGCFSASARCCTRREWRSRST
CRSCSSSSCWRTPRCAWASSCTDGRRVAAARSPRGAPDQEGASSAKGQQRCKSPPGHRRQETADAPSIISEAPIALVF

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00072
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Nucleotide Sequence
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CGGAAAAAAAGGTTGGAGGGATGAA...

GRMZM2G179827_T01 from maize genome v3


Related TFome: pUT6003

Amino Acid Sequence
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MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMRQVLHSSRVEISQYLPLLLKLVVLAYAALCLGELLHRWSSGGSCSLS
PWCA

Nucleotide Sequence
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CTTCCCGCTCTCCTCCTTCATCAGT...

GRMZM2G179827_T02 from maize genome v3

Amino Acid Sequence
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MRQVLHSSRVEISQYLPLLLKLVVLAYAALCLGELLHRWSSGGSCSLSPWCA

Nucleotide Sequence
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ACAAGTAGAGAAGAATCTTTTGTTG...

Zm00001d003598_T001 from maize genome v4

Amino Acid Sequence
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MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKALNPLKPIPVIVMSSEDE
PQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAKWSNNKLPPSAGAGAGASATSPSGRRA
NLAGVAMVRTHHVALPFPRTVRLKLNVSLTVTVTGCFSASARCCTRREWRSRSTCRSCSSSSCWRTPRCAWASSCTDGRR
VAAARSPRGAPDQEGASSAKGQQRCKSPPGHRRQETADAPSIISEAPIALVF

Nucleotide Sequence
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CTTCCCGCTCTCCTCCTTCATCAGT...

Zm00001d003598_T002 from maize genome v4

Amino Acid Sequence
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MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMRQVLHSSRVEISQYLPLLLKLVVLAYAALCLGELLHRWSSGGSCSLS
PWCA

Nucleotide Sequence
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TCCCGCTCTCCTCCTTCATCAGTCA...

Zm00001d003598_T003 from maize genome v4

Amino Acid Sequence
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MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMVRTHHVALPFPRTVRLKLNVSLTVTVTGCFSASARCCTRREWRSRST
CRSCSSSSCWRTPRCAWASSCTDGRRVAAARSPRGAPDQEGASSAKGQQRCKSPPGHRRQETADAPSIISEAPIALVF

Nucleotide Sequence
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CTCGACCTGTGGCCACCTGTGGCGT...

Zm00001d003598_T004 from maize genome v4

Amino Acid Sequence
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MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISR

Nucleotide Sequence
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GCCACCCACAAGTAGAGAAGAATCT...

Zm00001d003598_T005 from maize genome v4

Amino Acid Sequence
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MVVGWQLLALPVVRLIRKEQAAQKASNGARAPLGTDDRRLLMHQALFQRLQ

Nucleotide Sequence
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GCCACCCACAAGTAGAGAAGAATCT...

Zm00001d003598_T006 from maize genome v4

Amino Acid Sequence
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MRQVLHSSRVEISQYLPLLLKLVVLAYAALCLGELLHRWSSGGSCSLSPWCA

Nucleotide Sequence
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CCACCCACAAGTAGAGAAGAATCTT...

Zm00001d003598_T007 from maize genome v4

Amino Acid Sequence
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MRQVLHSSRVEISQYLPLLLKLVVLAYAALCLGELLHRWSSGGSCSLSPWCA

Nucleotide Sequence
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AGCCGATCCCTGTCATCGTCATGTC...

Zm00001eb082130_T002 from maize genome v5

Amino Acid Sequence
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MEAGGAGAEGVMRVLLVDDSPVDRRVAQLLLSSNSCAGSFHVIAVDSAKKAMEFLGLKDGGKEQAIDMVLTDYCMPEMTG
YDLLKAIKALNPLKPIPVIVMSSEDEPQRISRCLNAGAEDFIVKPLQSKDVQRLRNCSTVGRPSNKGGATLPCEENAVAK
WSNNKLPPSAGAGAGASATSPSGRRANLAGVAMRQVLHSSRVEISQYLPLLLKLVVLAYAALCLGELLHRWSSGGSCSLS
PWCA

Nucleotide Sequence
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CTTCCCGCTCTCCTCCTTCATCAGT...


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